Pseudomonas mendocina NK-01, MDS_0021

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas mendocina NK-01
GCF_000204295.1|latest
Locus Tag
MDS_0021
Name
Replicon chromosome
Genomic location 27087 - 28580 (+ strand)

Cross-References

RefSeq YP_004377804.1
GI 330500935
Entrez 10454803
INSDC AEB56052.1
NCBI Locus Tag MDS_0021
UniParc UPI000206E93D
UniProtKB Acc F4DV37
UniProtKB ID F4DV37_PSEMN
UniRef100 UniRef100_F4DV37
UniRef50 UniRef50_Q4K3N7
UniRef90 UniRef90_Q4K3N7

Product

Feature Type CDS
Coding Frame 1
Product Name
hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7) -13.27
Kyte-Doolittle Hydrophobicity Value -0.423
Molecular Weight (kDa) 55.5
Isoelectric Point (pI) 5.17

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
5N8N STRUCTURAL PROTEIN 02/23/17 Contracted sheath of a Pseudomonas aeruginosa type six secretion system consisting of TssB1 and TssC1 PSEUDOMONAS AERUGINOSA 3.28 ELECTRON MICROSCOPY 93.9

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 111 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000083 (1261 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: MDS_0021

Human Homologs

References

No references are associated with this feature.