Pseudomonas mendocina NK-01, MDS_0093

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas mendocina NK-01
GCF_000204295.1|latest
Locus Tag
MDS_0093
Name
Replicon chromosome
Genomic location 108219 - 109430 (- strand)

Cross-References

RefSeq YP_004377876.1
GI 330501007
Entrez 10454875
INSDC AEB56124.1
NCBI Locus Tag MDS_0093
UniParc UPI000206E9ED
UniProtKB Acc F4DVZ4
UniProtKB ID F4DVZ4_PSEMN
UniRef100 UniRef100_F4DVZ4
UniRef50 UniRef50_P07345
UniRef90 UniRef90_A4XNC9

Product

Feature Type CDS
Coding Frame 1
Product Name
tryptophan synthase subunit beta
Synonyms
Evidence for Translation
Charge (pH 7) -5.33
Kyte-Doolittle Hydrophobicity Value -0.175
Molecular Weight (kDa) 43745.5
Isoelectric Point (pI) 6.51

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 613 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000036 (538 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: MDS_0093

Human Homologs

References

No references are associated with this feature.