Pseudomonas mendocina NK-01, MDS_0325

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas mendocina NK-01
GCF_000204295.1|latest
Locus Tag
MDS_0325
Name
Replicon chromosome
Genomic location 346193 - 347239 (+ strand)

Cross-References

RefSeq YP_004378108.1
GI 330501239
Entrez 10455107
INSDC AEB56356.1
NCBI Locus Tag MDS_0325
UniParc UPI000206E627
UniProtKB Acc F4DYN9
UniProtKB ID F4DYN9_PSEMN
UniRef100 UniRef100_F4DYN9
UniRef50 UniRef50_W6RAF5
UniRef90 UniRef90_W6RAF5

Product

Feature Type CDS
Coding Frame 1
Product Name
AraC family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) -5.98
Kyte-Doolittle Hydrophobicity Value -0.075
Molecular Weight (kDa) 38122.0
Isoelectric Point (pI) 5.83

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 197 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG024638 (19 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: MDS_0325

Human Homologs

References

No references are associated with this feature.