Pseudomonas mendocina NK-01, MDS_0475

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas mendocina NK-01
GCF_000204295.1|latest
Locus Tag
MDS_0475
Name
Replicon chromosome
Genomic location 507762 - 509660 (- strand)

Cross-References

RefSeq YP_004378258.1
GI 330501389
Entrez 10455257
INSDC AEB56506.1
NCBI Locus Tag MDS_0475
UniParc UPI000206E8F8
UniProtKB Acc F4DZS8
UniProtKB ID F4DZS8_PSEMN
UniRef100 UniRef100_F4DZS8
UniRef50 UniRef50_Q4K4H4
UniRef90 UniRef90_F4DZS8

Product

Feature Type CDS
Coding Frame 1
Product Name
DEAD/DEAH box helicase
Synonyms
Evidence for Translation
Charge (pH 7) 26.58
Kyte-Doolittle Hydrophobicity Value -0.732
Molecular Weight (kDa) 68571.8
Isoelectric Point (pI) 10.65

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 637 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000419 (525 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: MDS_0475

Human Homologs

Ensembl 110, assembly GRCh38.p14
DEAD-box helicase 27 [Source:HGNC Symbol;Acc:HGNC:15837]
E-value: 5.9e-66
Percent Identity: 40.6

References

No references are associated with this feature.