Pseudomonas mendocina NK-01, MDS_1217

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas mendocina NK-01
GCF_000204295.1|latest
Locus Tag
MDS_1217
Name
Replicon chromosome
Genomic location 1331644 - 1332582 (+ strand)

Cross-References

RefSeq YP_004379000.1
GI 330502131
Entrez 10455999
INSDC AEB57248.1
NCBI Locus Tag MDS_1217
UniParc UPI000206E817
UniProtKB Acc F4DUF6
UniProtKB ID F4DUF6_PSEMN
UniRef100 UniRef100_F4DUF6
UniRef50 UniRef50_A0A080VLW4
UniRef90 UniRef90_F4DUF6

Product

Feature Type CDS
Coding Frame 1
Product Name
putative integrase
Synonyms
Evidence for Translation
Charge (pH 7) 23.73
Kyte-Doolittle Hydrophobicity Value -0.531
Molecular Weight (kDa) 35121.1
Isoelectric Point (pI) 10.78

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 439 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG014563 (57 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: MDS_1217

Human Homologs

References

No references are associated with this feature.