Pseudomonas mendocina NK-01, MDS_2143

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas mendocina NK-01
GCF_000204295.1|latest
Locus Tag
MDS_2143
Name
Replicon chromosome
Genomic location 2356056 - 2357153 (+ strand)

Cross-References

RefSeq YP_004379926.1
GI 330503057
Entrez 10456925
NCBI Locus Tag MDS_2143

Product

Feature Type CDS
Coding Frame 1
Product Name
ABC transporter
Synonyms
Evidence for Translation
Charge (pH 7) -6.20
Kyte-Doolittle Hydrophobicity Value -0.176
Molecular Weight (kDa) 41.1
Isoelectric Point (pI) 6.09

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG015627 (151 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: MDS_2143
Search term: ABC transporter

Human Homologs

Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily A member 6 [Source:HGNC Symbol;Acc:HGNC:36]
E-value: 2.4e-19
Percent Identity: 29.5

References

No references are associated with this feature.