Pseudomonas mendocina NK-01, MDS_2249

Gene Feature Overview

Strain	Pseudomonas mendocina NK-01 GCF_000204295.1|latest
Locus Tag	MDS_2249
Name
Replicon	chromosome
Genomic location	2453371 - 2455128 (+ strand)

Cross-References

RefSeq	YP_004380031.1
GI	330503162
Entrez	10457030
INSDC	AEB58280.1
NCBI Locus Tag	MDS_2249
UniParc	UPI000206E125
UniProtKB Acc	F4DS80
UniProtKB ID	F4DS80_PSEMN
UniRef100	UniRef100_F4DS80
UniRef50	UniRef50_D7HY21
UniRef90	UniRef90_W6R335

Product

Feature Type	CDS
Coding Frame	1
Product Name	lipid ABC transporter ATPase/inner membrane protein
Synonyms
Evidence for Translation
Charge (pH 7)	6.39
Kyte-Doolittle Hydrophobicity Value	0.316
Molecular Weight (kDa)	63204.5
Isoelectric Point (pI)	9.39

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001073 (497 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: MDS_2249 Search term: lipid ABC transporter ATPase/inner membrane protein

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000355637 ATP binding cassette subfamily B member 10 [Source:HGNC Symbol;Acc:HGNC:41] E-value: 4.2e-82 Percent Identity: 35.9

References