Pseudomonas mendocina NK-01, MDS_2255

Gene Feature Overview

Strain	Pseudomonas mendocina NK-01 GCF_000204295.1|latest
Locus Tag	MDS_2255
Name
Replicon	chromosome
Genomic location	2459267 - 2460547 (- strand)

Cross-References

RefSeq	YP_004380038.1
GI	330503169
Entrez	10457037
INSDC	AEB58286.1
NCBI Locus Tag	MDS_2255
UniParc	UPI000206E12C
UniProtKB Acc	F4DS87
UniProtKB ID	F4DS87_PSEMN
UniRef100	UniRef100_F4DS87
UniRef50	UniRef50_P18789
UniRef90	UniRef90_Q884A2

Product

Feature Type	CDS
Coding Frame	1
Product Name	type II citrate synthase
Synonyms
Evidence for Translation
Charge (pH 7)	-2.29
Kyte-Doolittle Hydrophobicity Value	-0.168
Molecular Weight (kDa)	47502.4
Isoelectric Point (pI)	6.65

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession	Header	Accession Date	Compound	Source	Resolution	Method	Percent Identity
6ZU0	TRANSFERASE	07/21/20	Crystal structure of citrate synthase (GltA) from Pseudomonas aeruginosa	Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)	3.397	X-RAY DIFFRACTION	90.3

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 552 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG003783 (540 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: MDS_2255 Search term: type II citrate synthase

Human Homologs

References