Pseudomonas mendocina NK-01, MDS_2386

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas mendocina NK-01
GCF_000204295.1|latest
Locus Tag
MDS_2386
Name
Replicon chromosome
Genomic location 2610633 - 2611913 (+ strand)

Cross-References

RefSeq YP_004380169.1
GI 330503300
Entrez 10457168
INSDC AEB58417.1
NCBI Locus Tag MDS_2386
UniParc UPI000206E481
UniProtKB Acc F4DTY9
UniProtKB ID F4DTY9_PSEMN
UniRef100 UniRef100_F4DTY9
UniRef50 UniRef50_Q8RH11
UniRef90 UniRef90_A4XUX4

Product

Feature Type CDS
Coding Frame 1
Product Name
seryl-tRNA synthetase
Synonyms
Evidence for Translation
Charge (pH 7) -10.93
Kyte-Doolittle Hydrophobicity Value -0.345
Molecular Weight (kDa) 47326.3
Isoelectric Point (pI) 5.16

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 651 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002939 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: MDS_2386

Human Homologs

Ensembl 110, assembly GRCh38.p14
seryl-tRNA synthetase 1 [Source:HGNC Symbol;Acc:HGNC:10537]
E-value: 4.6e-54
Percent Identity: 37.8

References

No references are associated with this feature.