Pseudomonas mendocina NK-01, MDS_2408

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas mendocina NK-01
GCF_000204295.1|latest
Locus Tag
MDS_2408
Name
Replicon chromosome
Genomic location 2631393 - 2632280 (+ strand)

Cross-References

RefSeq YP_004380191.1
GI 330503322
Entrez 10457190
INSDC AEB58439.1
NCBI Locus Tag MDS_2408
UniParc UPI000206E497
UniProtKB Acc F4DU11
UniProtKB ID F4DU11_PSEMN
UniRef100 UniRef100_F4DU11
UniRef50 UniRef50_L0DYL2
UniRef90 UniRef90_F4DU11

Product

Feature Type CDS
Coding Frame 1
Product Name
collagenase
Synonyms
Evidence for Translation
Charge (pH 7) -13.37
Kyte-Doolittle Hydrophobicity Value 0.086
Molecular Weight (kDa) 32168.5
Isoelectric Point (pI) 4.42

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 102 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001764 (382 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: MDS_2408
Search term: collagenase

Human Homologs

References

No references are associated with this feature.