Pseudomonas mendocina NK-01, MDS_2536

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas mendocina NK-01
GCF_000204295.1|latest
Locus Tag
MDS_2536
Name
Replicon chromosome
Genomic location 2782763 - 2785942 (+ strand)

Cross-References

RefSeq YP_004380319.1
GI 330503450
Entrez 10457318
INSDC AEB58567.1
NCBI Locus Tag MDS_2536
UniParc UPI000206DA9B
UniProtKB Acc F4DVI1
UniProtKB ID F4DVI1_PSEMN
UniRef100 UniRef100_F4DVI1
UniRef50 UniRef50_Q8EBL9
UniRef90 UniRef90_S6BID1

Product

Feature Type CDS
Coding Frame 1
Product Name
hydrophobe/amphiphile efflux-1 (HAE1) family protein
Synonyms
Evidence for Translation
Charge (pH 7) -13.67
Kyte-Doolittle Hydrophobicity Value 0.297
Molecular Weight (kDa) 114893.9
Isoelectric Point (pI) 5.16

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AMR gene predictions from CARD database

Identified using the Resistance Gene Identifier (RGI)

Model Name Definition Accession Model Type (?) SNP Cutoff Bit Score Percent Identity CARD Version
adeF AdeF is the membrane fusion protein of the multidrug efflux complex AdeFGH. [PMID:20696879] ARO:3000777 protein homolog model Strict 1311.6 66.25 3.2.5

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 489 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000417 (2093 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: MDS_2536

Human Homologs

References

No references are associated with this feature.