Pseudomonas mendocina NK-01, MDS_2629

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas mendocina NK-01
GCF_000204295.1|latest
Locus Tag
MDS_2629
Name
Replicon chromosome
Genomic location 2878673 - 2879263 (- strand)

Cross-References

RefSeq YP_004380412.1
GI 330503543
Entrez 10457411
INSDC AEB58660.1
NCBI Locus Tag MDS_2629
UniParc UPI000206DD82
UniProtKB Acc F4DWG1
UniProtKB ID F4DWG1_PSEMN
UniRef100 UniRef100_F4DWG1
UniRef50 UniRef50_A4VL64
UniRef90 UniRef90_I2BLX6

Product

Feature Type CDS
Coding Frame 1
Product Name
RNA polymerase sigma factor SigX
Synonyms
Evidence for Translation
Charge (pH 7) -0.13
Kyte-Doolittle Hydrophobicity Value -0.698
Molecular Weight (kDa) 23.4
Isoelectric Point (pI) 6.94

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 471 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003619 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: MDS_2629

Human Homologs

References

No references are associated with this feature.