Pseudomonas mendocina NK-01, MDS_3127

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas mendocina NK-01
GCF_000204295.1|latest
Locus Tag
MDS_3127
Name
Replicon chromosome
Genomic location 3449089 - 3450447 (- strand)

Cross-References

RefSeq YP_004380910.1
GI 330504041
Entrez 10457909
INSDC AEB59158.1
NCBI Locus Tag MDS_3127
UniParc UPI000206DCA9
UniProtKB Acc F4DM36
UniProtKB ID F4DM36_PSEMN
UniRef100 UniRef100_F4DM36
UniRef50 UniRef50_Q4K898
UniRef90 UniRef90_W6R166

Product

Feature Type CDS
Coding Frame 1
Product Name
23S rRNA 5-methyluridine methyltransferase
Synonyms
Evidence for Translation
Charge (pH 7) 3.70
Kyte-Doolittle Hydrophobicity Value -0.166
Molecular Weight (kDa) 49456.1
Isoelectric Point (pI) 8.02

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 550 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000899 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: MDS_3127

Human Homologs

References

No references are associated with this feature.