Pseudomonas syringae pv. tomato DC3000, PSPTO_0159 (trpA)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0159
NCBI Old Locus Tag	PSPTO0159
Name	trpA Synonym: PSPTO0159
Replicon	chromosome
Genomic location	180074 - 180886 (+ strand)

Cross-References

RefSeq	NP_790018.1
GI	28867399
Entrez	1181767
INSDC	AAO53713.1
NCBI Locus Tag	PSPTO_0159
NCBI Old Locus Tag	PSPTO0159
UniParc	UPI000000832C
UniProtKB Acc	Q88B60
UniProtKB ID	TRPA_PSESM
UniRef100	UniRef100_Q88B60
UniRef50	UniRef50_P07344
UniRef90	UniRef90_Q88B60

Product

Feature Type	CDS
Coding Frame	1
Product Name	tryptophan synthase subunit alpha
Synonyms
Evidence for Translation
Charge (pH 7)	-8.07
Kyte-Doolittle Hydrophobicity Value	0.195
Molecular Weight (kDa)	28.5
Isoelectric Point (pI)	4.73

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 578 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000035 (538 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0159 Search term: trpA Search term: tryptophan synthase subunit alpha

Human Homologs

References