Pseudomonas syringae pv. tomato DC3000, PSPTO_0444

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0444
NCBI Old Locus Tag	PSPTO0444
Name	Synonym: PSPTO0444
Replicon	chromosome
Genomic location	489138 - 489656 (+ strand)

Cross-References

RefSeq	NP_790293.1
GI	28867674
Entrez	1182053
INSDC	AAO53988.1
NCBI Locus Tag	PSPTO_0444
NCBI Old Locus Tag	PSPTO0444
UniParc	UPI0000008438
UniProtKB Acc	Q88AE6
UniProtKB ID	Q88AE6_PSESM
UniRef100	UniRef100_Q88AE6
UniRef50	UniRef50_Q4K4S1
UniRef90	UniRef90_Q88AE6

Product

Feature Type	CDS
Coding Frame	1
Product Name	RNA polymerase sigma-70 family protein
Synonyms
Evidence for Translation
Charge (pH 7)	0.65
Kyte-Doolittle Hydrophobicity Value	-0.191
Molecular Weight (kDa)	19.5
Isoelectric Point (pI)	7.50

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 230 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000463 (1798 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0444 Search term: RNA polymerase sigma-70 family protein

Human Homologs

References