Pseudomonas syringae pv. tomato DC3000, PSPTO_0446

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0446
NCBI Old Locus Tag	PSPTO0446
Name	Synonym: PSPTO0446
Replicon	chromosome
Genomic location	490766 - 491899 (+ strand)

Cross-References

RefSeq	NP_790295.1
GI	28867676
Entrez	1182055
INSDC	AAO53990.1
NCBI Locus Tag	PSPTO_0446
NCBI Old Locus Tag	PSPTO0446
UniParc	UPI000000843A
UniProtKB Acc	Q88AE4
UniProtKB ID	Q88AE4_PSESM
UniRef100	UniRef100_Q88AE4
UniRef50	UniRef50_Q4K4R8
UniRef90	UniRef90_Q88AE4

Product

Feature Type	CDS
Coding Frame	1
Product Name	membrane protein
Synonyms
Evidence for Translation
Charge (pH 7)	-1.46
Kyte-Doolittle Hydrophobicity Value	0.268
Molecular Weight (kDa)	41.6
Isoelectric Point (pI)	6.80

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 115 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG003508 (498 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0446 Search term: membrane protein

Human Homologs

References