Pseudomonas syringae pv. tomato DC3000, PSPTO_0483 (rarD-1)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas syringae pv. tomato DC3000
GCF_000007805.1|latest |
| Locus Tag |
PSPTO_0483
|
| NCBI Old Locus Tag | PSPTO0483 |
| Name |
rarD-1
Synonym: PSPTO0483 |
| Replicon | chromosome |
| Genomic location | 529381 - 530268 (- strand) |
Cross-References
| RefSeq | NP_790332.1 |
| GI | 28867713 |
| Entrez | 1182092 |
| INSDC | AAO54027.1 |
| NCBI Locus Tag | PSPTO_0483 |
| NCBI Old Locus Tag | PSPTO0483 |
| UniParc | UPI000000845D |
| UniProtKB Acc | Q88AA9 |
| UniProtKB ID | Q88AA9_PSESM |
| UniRef100 | UniRef100_Q88AA9 |
| UniRef50 | UniRef50_Q9I633 |
| UniRef90 | UniRef90_Q88AA9 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
rarD protein
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 13.15 |
| Kyte-Doolittle Hydrophobicity Value | 0.811 |
| Molecular Weight (kDa) | 32.8 |
| Isoelectric Point (pI) | 10.64 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 239 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG000474 (552 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PSPTO_0483
Search term: rarD-1
Search term: rarD protein
|
Human Homologs
References
No references are associated with this feature.