Pseudomonas syringae pv. tomato DC3000, PSPTO_0498 (bioD)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0498
NCBI Old Locus Tag	PSPTO0498
Name	bioD Synonym: PSPTO0498
Replicon	chromosome
Genomic location	544902 - 545582 (+ strand)

Cross-References

RefSeq	NP_790347.1
GI	28867728
Entrez	1182107
INSDC	AAO54042.1
NCBI Locus Tag	PSPTO_0498
NCBI Old Locus Tag	PSPTO0498
UniParc	UPI000000846C
UniProtKB Acc	Q88A94
UniProtKB ID	Q88A94_PSESM
UniRef100	UniRef100_Q88A94
UniRef50	UniRef50_W7PQT1
UniRef90	UniRef90_Q88A94

Product

Feature Type	CDS
Coding Frame	1
Product Name	dethiobiotin synthetase
Synonyms
Evidence for Translation
Charge (pH 7)	-7.44
Kyte-Doolittle Hydrophobicity Value	0.323
Molecular Weight (kDa)	23.6
Isoelectric Point (pI)	5.02

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 408 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000491 (538 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0498 Search term: bioD Search term: dethiobiotin synthetase

Human Homologs

References