Pseudomonas syringae pv. tomato DC3000, PSPTO_0503 (shcF)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0503
NCBI Old Locus Tag	PSPTO0503
Name	shcF Synonym: PSPTO0503
Replicon	chromosome
Genomic location	550174 - 550569 (- strand)

Cross-References

RefSeq	NP_790352.1
GI	28867733
Entrez	1182112
INSDC	AAP83639.1
NCBI Locus Tag	PSPTO_0503
NCBI Old Locus Tag	PSPTO0503
UniParc	UPI0000008471
UniProtKB Acc	Q88A89
UniProtKB ID	Q88A89_PSESM
UniRef100	UniRef100_Q88A89
UniRef50	UniRef50_Q9K2L2
UniRef90	UniRef90_Q88A89

Product

Feature Type	CDS
Coding Frame	1
Product Name	type III chaperone protein ShcF
Synonyms
Evidence for Translation
Charge (pH 7)	-0.56
Kyte-Doolittle Hydrophobicity Value	-0.310
Molecular Weight (kDa)	15.3
Isoelectric Point (pI)	6.53

Subcellular localization

Individual Mappings	Localization Confidence PMID Unknown Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Pathogenic Found only in pathogenic strains Hits to this gene were found in one genus

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG017285 (4 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0503 Search term: shcF Search term: type III chaperone protein ShcF

Human Homologs

References