Pseudomonas syringae pv. tomato DC3000, PSPTO_0505

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0505
NCBI Old Locus Tag	PSPTO0505
Name	Synonym: PSPTO0505
Replicon	chromosome
Genomic location	552012 - 553307 (+ strand)

Cross-References

RefSeq	NP_790353.1
GI	28867734
Entrez	1182114
INSDC	AAO54048.1
NCBI Locus Tag	PSPTO_0505
NCBI Old Locus Tag	PSPTO0505
UniParc	UPI0000008472
UniProtKB Acc	Q88A88
UniProtKB ID	Q88A88_PSESM
UniRef100	UniRef100_Q88A88
UniRef50	UniRef50_K9NQ36
UniRef90	UniRef90_D7I601

Product

Feature Type	CDS
Coding Frame	1
Product Name	diguanylate cyclase
Synonyms
Evidence for Translation
Charge (pH 7)	7.94
Kyte-Doolittle Hydrophobicity Value	0.144
Molecular Weight (kDa)	48.3
Isoelectric Point (pI)	8.71

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 449 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG015098 (211 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0505 Search term: diguanylate cyclase

Human Homologs

References