Pseudomonas syringae pv. tomato DC3000, PSPTO_0536

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0536
NCBI Old Locus Tag	PSPTO0536
Name	Synonym: PSPTO0536
Replicon	chromosome
Genomic location	586100 - 588589 (- strand)

Cross-References

RefSeq	NP_790383.1
GI	28867764
Entrez	1182146
INSDC	AAO54078.1
NCBI Locus Tag	PSPTO_0536
NCBI Old Locus Tag	PSPTO0536
UniParc	UPI000000848D
UniProtKB Acc	Q88A61
UniProtKB ID	Q88A61_PSESM
UniRef100	UniRef100_Q88A61
UniRef50	UniRef50_Q88A61
UniRef90	UniRef90_Q88A61

Product

Feature Type	CDS
Coding Frame	1
Product Name	sensory box/GGDEF domain/EAL domain-containing protein
Synonyms
Evidence for Translation
Charge (pH 7)	-25.78
Kyte-Doolittle Hydrophobicity Value	-0.144
Molecular Weight (kDa)	91.7
Isoelectric Point (pI)	5.22

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 527 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000558 (491 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0536 Search term: sensory box/GGDEF domain/EAL domain-containing protein

Human Homologs

References