Pseudomonas syringae pv. tomato DC3000, PSPTO_0924 (pilD)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0924
NCBI Old Locus Tag	PSPTO0924
Name	pilD Synonym: PSPTO0924
Replicon	chromosome
Genomic location	1003193 - 1004065 (- strand)

Cross-References

RefSeq	NP_790763.1
GI	28868144
Entrez	1182553
INSDC	AAO54458.1
NCBI Locus Tag	PSPTO_0924
NCBI Old Locus Tag	PSPTO0924
UniParc	UPI00000085FE
UniProtKB Acc	Q888U2
UniProtKB ID	Q888U2_PSESM
UniRef100	UniRef100_Q888U2
UniRef50	UniRef50_Q48NC1
UniRef90	UniRef90_Q48NC1

Product

Feature Type	CDS
Coding Frame	1
Product Name	type IV pilus prepilin peptidase PilD
Synonyms
Evidence for Translation
Charge (pH 7)	3.97
Kyte-Doolittle Hydrophobicity Value	0.681
Molecular Weight (kDa)	32.0
Isoelectric Point (pI)	8.28

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 367 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004109 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0924 Search term: pilD Search term: type IV pilus prepilin peptidase PilD

Human Homologs

References