Pseudomonas syringae pv. tomato DC3000, PSPTO_0926 (pilB)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0926
NCBI Old Locus Tag	PSPTO0926
Name	pilB Synonym: PSPTO0926
Replicon	chromosome
Genomic location	1005287 - 1006981 (- strand)

Cross-References

RefSeq	NP_790765.1
GI	28868146
Entrez	1182555
INSDC	AAO54460.1
NCBI Locus Tag	PSPTO_0926
NCBI Old Locus Tag	PSPTO0926
UniParc	UPI0000008600
UniProtKB Acc	Q888U0
UniProtKB ID	Q888U0_PSESM
UniRef100	UniRef100_Q888U0
UniRef50	UniRef50_P22608
UniRef90	UniRef90_Q888U0

Product

Feature Type	CDS
Coding Frame	1
Product Name	type IV pilus biogenesis protein PilB
Synonyms
Evidence for Translation
Charge (pH 7)	-4.20
Kyte-Doolittle Hydrophobicity Value	-0.208
Molecular Weight (kDa)	62.4
Isoelectric Point (pI)	6.39

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 522 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004107 (418 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0926 Search term: pilB Search term: type IV pilus biogenesis protein PilB

Human Homologs

References