Pseudomonas syringae pv. tomato DC3000, PSPTO_1075

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_1075
NCBI Old Locus Tag	PSPTO1075
Name	Synonym: PSPTO1075
Replicon	chromosome
Genomic location	1179310 - 1180674 (- strand)

Cross-References

RefSeq	NP_790909.1
GI	28868290
Entrez	1182710
INSDC	AAO54604.1
NCBI Locus Tag	PSPTO_1075
NCBI Old Locus Tag	PSPTO1075
UniParc	UPI000000868C
UniProtKB Acc	Q888F1
UniProtKB ID	Q888F1_PSESM
UniRef100	UniRef100_Q888F1
UniRef50	UniRef50_D7HW77
UniRef90	UniRef90_D7HW77

Product

Feature Type	CDS
Coding Frame	1
Product Name	O-antigen ABC transporter, ATP-binding protein
Synonyms
Evidence for Translation
Charge (pH 7)	-14.44
Kyte-Doolittle Hydrophobicity Value	-0.186
Molecular Weight (kDa)	50.0
Isoelectric Point (pI)	4.79

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001312 (602 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_1075 Search term: O-antigen ABC transporter, ATP-binding protein

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000465351 ATP binding cassette subfamily A member 5 [Source:HGNC Symbol;Acc:HGNC:35] E-value: 3.6e-17 Percent Identity: 26.9

References