Pseudomonas syringae pv. tomato DC3000, PSPTO_1639

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_1639
NCBI Old Locus Tag	PSPTO1639
Name	Synonym: PSPTO1639
Replicon	chromosome
Genomic location	1795541 - 1797523 (- strand)

Cross-References

RefSeq	NP_791464.1
GI	28868845
Entrez	1183276
INSDC	AAO55159.1
NCBI Locus Tag	PSPTO_1639
NCBI Old Locus Tag	PSPTO1639
UniParc	UPI00000088A7
UniProtKB Acc	Q886E0
UniProtKB ID	MNMC_PSESM
UniRef100	UniRef100_Q886E0
UniRef50	UniRef50_Q48LF6
UniRef90	UniRef90_Q48LF6

Product

Feature Type	CDS
Coding Frame	1
Product Name	bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase
Synonyms
Evidence for Translation
Charge (pH 7)	-3.70
Kyte-Doolittle Hydrophobicity Value	-0.109
Molecular Weight (kDa)	72.2
Isoelectric Point (pI)	6.64

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 233 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002184 (530 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_1639 Search term: bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase

Human Homologs

References