Pseudomonas syringae pv. tomato DC3000, PSPTO_1693

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_1693
NCBI Old Locus Tag	PSPTO1693
Name	Synonym: PSPTO1693
Replicon	chromosome
Genomic location	1862367 - 1863722 (+ strand)

Cross-References

RefSeq	NP_791518.1
GI	28868899
Entrez	1183330
INSDC	AAO55213.1
NCBI Locus Tag	PSPTO_1693
NCBI Old Locus Tag	PSPTO1693
UniParc	UPI00000088DB
UniProtKB Acc	Q885Y8
UniProtKB ID	RLMD_PSESM
UniRef100	UniRef100_Q885Y8
UniRef50	UniRef50_Q4K898
UniRef90	UniRef90_Q48FH7

Product

Feature Type	CDS
Coding Frame	1
Product Name	23S rRNA m(5)U1939 methyltransferase
Synonyms
Evidence for Translation
Charge (pH 7)	3.45
Kyte-Doolittle Hydrophobicity Value	-0.059
Molecular Weight (kDa)	49.3
Isoelectric Point (pI)	7.85

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 551 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000899 (536 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_1693 Search term: 23S rRNA m(5)U1939 methyltransferase

Human Homologs

References