Pseudomonas syringae pv. tomato DC3000, PSPTO_2196

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_2196
NCBI Old Locus Tag	PSPTO2196
Name	Synonym: PSPTO2196
Replicon	chromosome
Genomic location	2416353 - 2416721 (+ strand)

Cross-References

RefSeq	NP_792017.1
GI	28869398
Entrez	1183847
INSDC	AAO55712.1
NCBI Locus Tag	PSPTO_2196
NCBI Old Locus Tag	PSPTO2196
UniParc	UPI0000008AC9
UniProtKB Acc	Q884A0
UniProtKB ID	Q884A0_PSESM
UniRef100	UniRef100_A0A038GBU9
UniRef50	UniRef50_G8Q3B8
UniRef90	UniRef90_G8Q3B8

Product

Feature Type	CDS
Coding Frame	1
Product Name	succinate dehydrogenase, hydrophobic membrane anchor protein
Synonyms
Evidence for Translation
Charge (pH 7)	2.90
Kyte-Doolittle Hydrophobicity Value	0.896
Molecular Weight (kDa)	13.7
Isoelectric Point (pI)	9.04

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 107 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG003781 (539 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_2196 Search term: succinate dehydrogenase, hydrophobic membrane anchor protein

Human Homologs

References