Pseudomonas syringae pv. tomato DC3000, PSPTO_2298

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_2298
NCBI Old Locus TagPSPTO2298
Name
Synonym: PSPTO2298
Replicon chromosome
Genomic location 2542234 - 2542731 (+ strand)

Cross-References

RefSeq NP_792117.1
GI 28869498
Entrez 1183949
INSDC AAO55812.1
NCBI Locus Tag PSPTO_2298
NCBI Old Locus Tag PSPTO2298
UniParc UPI0000008B2B
UniProtKB Acc Q883Q2
UniProtKB ID Q883Q2_PSESM
UniRef100 UniRef100_Q48JY9
UniRef50 UniRef50_A4VL64
UniRef90 UniRef90_A4VL64

Product

Feature Type CDS
Coding Frame 1
Product Name
RNA polymerase sigma factor SigX
Synonyms
Evidence for Translation
Charge (pH 7) 3.15
Kyte-Doolittle Hydrophobicity Value -0.618
Molecular Weight (kDa) 19.7
Isoelectric Point (pI) 8.75

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 470 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003619 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_2298

Human Homologs

References

No references are associated with this feature.