Pseudomonas syringae pv. tomato DC3000, PSPTO_2548

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_2548
NCBI Old Locus Tag	PSPTO2548
Name	Synonym: PSPTO2548
Replicon	chromosome
Genomic location	2812959 - 2815562 (+ strand)

Cross-References

RefSeq	NP_792358.1
GI	28869739
Entrez	1184200
INSDC	AAO56053.1
NCBI Locus Tag	PSPTO_2548
NCBI Old Locus Tag	PSPTO2548
UniParc	UPI0000008C0E
UniProtKB Acc	Q882S7
UniProtKB ID	Q882S7_PSESM
UniRef100	UniRef100_Q882S7
UniRef50	UniRef50_G8Q741
UniRef90	UniRef90_Q882S7

Product

Feature Type	CDS
Coding Frame	1
Product Name	clpB protein
Synonyms
Evidence for Translation
Charge (pH 7)	-14.42
Kyte-Doolittle Hydrophobicity Value	-0.056
Molecular Weight (kDa)	95.1
Isoelectric Point (pI)	5.51

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 597 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG017924 (3 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_2548 Search term: clpB protein

Human Homologs

References