Pseudomonas syringae pv. tomato DC3000, PSPTO_3036

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_3036
NCBI Old Locus TagPSPTO3036
Name
Synonym: PSPTO3036
Replicon chromosome
Genomic location 3413324 - 3415609 (- strand)

Cross-References

RefSeq NP_792831.1
GI 28870212
Entrez 1184693
INSDC AAO56526.1
NCBI Locus Tag PSPTO_3036
NCBI Old Locus Tag PSPTO3036
UniParc UPI0000008DDC
UniProtKB Acc Q880W4
UniProtKB ID Q880W4_PSESM
UniRef100 UniRef100_Q880W4
UniRef50 UniRef50_B3RA47
UniRef90 UniRef90_D7HZF7

Product

Feature Type CDS
Coding Frame 1
Product Name
hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7) 11.25
Kyte-Doolittle Hydrophobicity Value -0.123
Molecular Weight (kDa) 85.1
Isoelectric Point (pI) 8.50

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 187 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003537 (530 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_3036

Human Homologs

Ensembl 110, assembly GRCh38.p14
BRCA1 interacting helicase 1 [Source:HGNC Symbol;Acc:HGNC:20473]
E-value: 5.4e-05
Percent Identity: 25.7
Ensembl 110, assembly GRCh38.p14
BRCA1 interacting helicase 1 [Source:HGNC Symbol;Acc:HGNC:20473]
E-value: 5.4e-05
Percent Identity: 25.7
Ensembl 110, assembly GRCh38.p14
BRCA1 interacting helicase 1 [Source:HGNC Symbol;Acc:HGNC:20473]
E-value: 5.4e-05
Percent Identity: 25.7
Ensembl 110, assembly GRCh38.p14
BRCA1 interacting helicase 1 [Source:HGNC Symbol;Acc:HGNC:20473]
E-value: 5.4e-05
Percent Identity: 25.7
Ensembl 110, assembly GRCh38.p14
BRCA1 interacting helicase 1 [Source:HGNC Symbol;Acc:HGNC:20473]
E-value: 5.4e-05
Percent Identity: 25.7
Ensembl 110, assembly GRCh38.p14
BRCA1 interacting helicase 1 [Source:HGNC Symbol;Acc:HGNC:20473]
E-value: 5.4e-05
Percent Identity: 25.7
Ensembl 110, assembly GRCh38.p14
BRCA1 interacting helicase 1 [Source:HGNC Symbol;Acc:HGNC:20473]
E-value: 5.4e-05
Percent Identity: 25.7
Ensembl 110, assembly GRCh38.p14
BRCA1 interacting helicase 1 [Source:HGNC Symbol;Acc:HGNC:20473]
E-value: 5.4e-05
Percent Identity: 25.7
Ensembl 110, assembly GRCh38.p14
BRCA1 interacting helicase 1 [Source:HGNC Symbol;Acc:HGNC:20473]
E-value: 5.4e-05
Percent Identity: 25.7
Ensembl 110, assembly GRCh38.p14
BRCA1 interacting helicase 1 [Source:HGNC Symbol;Acc:HGNC:20473]
E-value: 5.4e-05
Percent Identity: 25.7
Ensembl 110, assembly GRCh38.p14
BRCA1 interacting helicase 1 [Source:HGNC Symbol;Acc:HGNC:20473]
E-value: 5.4e-05
Percent Identity: 25.7
Ensembl 110, assembly GRCh38.p14
BRCA1 interacting helicase 1 [Source:HGNC Symbol;Acc:HGNC:20473]
E-value: 5.4e-05
Percent Identity: 25.7
Ensembl 110, assembly GRCh38.p14
BRCA1 interacting helicase 1 [Source:HGNC Symbol;Acc:HGNC:20473]
E-value: 5.4e-05
Percent Identity: 25.7

References

No references are associated with this feature.