Pseudomonas syringae pv. tomato DC3000, PSPTO_3040

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_3040
NCBI Old Locus TagPSPTO3040
Name
Synonym: PSPTO3040
Replicon chromosome
Genomic location 3420579 - 3421493 (+ strand)

Cross-References

RefSeq NP_792835.1
GI 28870216
Entrez 1184697
INSDC AAO56530.1
NCBI Locus Tag PSPTO_3040
NCBI Old Locus Tag PSPTO3040
UniParc UPI0000008DE0
UniProtKB Acc Q880W0
UniProtKB ID Q880W0_PSESM
UniRef100 UniRef100_Q880W0
UniRef50 UniRef50_Q9I0Z0
UniRef90 UniRef90_Q48JB6

Product

Feature Type CDS
Coding Frame 1
Product Name
LysR family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) 0.18
Kyte-Doolittle Hydrophobicity Value -0.006
Molecular Weight (kDa) 33.6
Isoelectric Point (pI) 7.08

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 293 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001179 (1943 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_3040

Human Homologs

References

No references are associated with this feature.