Pseudomonas syringae pv. tomato DC3000, PSPTO_3046

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_3046
NCBI Old Locus TagPSPTO3046
Name
Synonym: PSPTO3046
Replicon chromosome
Genomic location 3425886 - 3427889 (- strand)

Cross-References

RefSeq NP_792840.1
GI 28870221
Entrez 1184703
INSDC AAO56535.1
NCBI Locus Tag PSPTO_3046
NCBI Old Locus Tag PSPTO3046
UniParc UPI0000008DE5
UniProtKB Acc Q880V5
UniProtKB ID Q880V5_PSESM
UniRef100 UniRef100_Q880V5
UniRef50 UniRef50_D7HZH6
UniRef90 UniRef90_Q880V5

Product

Feature Type CDS
Coding Frame 1
Product Name
sigma-54 dependent transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) -3.54
Kyte-Doolittle Hydrophobicity Value -0.122
Molecular Weight (kDa) 73.1
Isoelectric Point (pI) 6.61

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 469 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG014599 (288 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_3046

Human Homologs

References

No references are associated with this feature.