Pseudomonas syringae pv. tomato DC3000, PSPTO_3066

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_3066
NCBI Old Locus Tag	PSPTO3066
Name	Synonym: PSPTO3066
Replicon	chromosome
Genomic location	3448873 - 3449457 (+ strand)

Cross-References

RefSeq	NP_792860.1
GI	28870241
Entrez	1184723
INSDC	AAO56555.1
NCBI Locus Tag	PSPTO_3066
NCBI Old Locus Tag	PSPTO3066
UniParc	UPI0000008DF9
UniProtKB Acc	Q880T5
UniProtKB ID	Q880T5_PSESM
UniRef100	UniRef100_Q880T5
UniRef50	UniRef50_Q880T5
UniRef90	UniRef90_Q880T5

Product

Feature Type	CDS
Coding Frame	1
Product Name	membrane protein
Synonyms
Evidence for Translation
Charge (pH 7)	16.12
Kyte-Doolittle Hydrophobicity Value	0.566
Molecular Weight (kDa)	21.4
Isoelectric Point (pI)	11.63

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 73 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG018178 (16 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_3066 Search term: membrane protein

Human Homologs

References