Pseudomonas syringae pv. tomato DC3000, PSPTO_3072

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_3072
NCBI Old Locus TagPSPTO3072
Name
Synonym: PSPTO3072
Replicon chromosome
Genomic location 3454877 - 3455776 (- strand)

Cross-References

RefSeq NP_792866.1
GI 28870247
Entrez 1184729
INSDC AAO56561.1
NCBI Locus Tag PSPTO_3072
NCBI Old Locus Tag PSPTO3072
UniParc UPI0000008DFF
UniProtKB Acc Q880S9
UniProtKB ID Q880S9_PSESM
UniRef100 UniRef100_Q880S9
UniRef50 UniRef50_I3TNJ0
UniRef90 UniRef90_Q880S9

Product

Feature Type CDS
Coding Frame 1
Product Name
AraC family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) 3.29
Kyte-Doolittle Hydrophobicity Value -0.024
Molecular Weight (kDa) 33.0
Isoelectric Point (pI) 8.21

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 332 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001309 (1168 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_3072

Human Homologs

References

No references are associated with this feature.