Pseudomonas syringae pv. tomato DC3000, PSPTO_3073

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_3073
NCBI Old Locus Tag	PSPTO3073
Name	Synonym: PSPTO3073
Replicon	chromosome
Genomic location	3455936 - 3456694 (+ strand)

Cross-References

RefSeq	NP_792867.1
GI	28870248
Entrez	1184730
INSDC	AAO56562.1
NCBI Locus Tag	PSPTO_3073
NCBI Old Locus Tag	PSPTO3073
UniParc	UPI0000008E00
UniProtKB Acc	Q880S8
UniProtKB ID	Q880S8_PSESM
UniRef100	UniRef100_Q880S8
UniRef50	UniRef50_W7NXS9
UniRef90	UniRef90_S6PMT5

Product

Feature Type	CDS
Coding Frame	1
Product Name	short chain dehydrogenase/reductase family oxidoreductase
Synonyms
Evidence for Translation
Charge (pH 7)	0.95
Kyte-Doolittle Hydrophobicity Value	0.232
Molecular Weight (kDa)	26.6
Isoelectric Point (pI)	7.82

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 652 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG018180 (91 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_3073 Search term: short chain dehydrogenase/reductase family oxidoreductase

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000263278 hydroxysteroid 17-beta dehydrogenase 14 [Source:HGNC Symbol;Acc:HGNC:23238] E-value: 4.4e-12 Percent Identity: 27.5

References