Pseudomonas syringae pv. tomato DC3000, PSPTO_3087 (hopAB2)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_3087
NCBI Old Locus TagPSPTO3087
Name
hopAB2
Synonym: PSPTO3087
Replicon chromosome
Genomic location 3468470 - 3470131 (- strand)

Cross-References

RefSeq NP_792881.1
GI 28870262
Entrez 1184744
INSDC AAO56576.1
NCBI Locus Tag PSPTO_3087
NCBI Old Locus Tag PSPTO3087
UniParc UPI0000008E0E
UniProtKB Acc Q8RSY1
UniProtKB ID HPAB2_PSESM
UniRef100 UniRef100_Q8RSY1
UniRef50 UniRef50_Q8RSY1
UniRef90 UniRef90_Q8RSY1

Product

Feature Type CDS
Coding Frame 1
Product Name
type III effector HopAB2
Product Name Confidence: Class 2
Synonyms
Evidence for Translation
Charge (pH 7) 13.36
Kyte-Doolittle Hydrophobicity Value -0.551
Molecular Weight (kDa) 59.5
Isoelectric Point (pI) 10.70

Subcellular localization

Individual Mappings
Localization Confidence PMID
Extracellular Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
3HGL LIGASE 05/14/09 crystal of AvrPtoB 121-205 Pseudomonas syringae pv. tomato 1.9 X-RAY DIFFRACTION 100.0
3TL8 TRANSFERASE/LIGASE 08/29/11 The AvrPtoB-BAK1 complex reveals two structurally similar kinaseinteracting domains in a single type III effector Arabidopsis thaliana; Pseudomonas syringae pv. tomato 2.5 X-RAY DIFFRACTION 94.9
3HGK TRANSFERASE 05/14/09 crystal structure of effect protein AvrptoB complexed with kinase Pto Pseudomonas syringae pv. tomato; Solanum pimpinellifolium 3.3 X-RAY DIFFRACTION 100.0
2FD4 LIGASE 12/13/05 Crystal Structure of AvrPtoB (436-553) Pseudomonas syringae 1.8 X-RAY DIFFRACTION 100.0

Pathogen Association Analysis

Results
Pathogenic
Found only in pathogenic strains
Hits to this gene were found in one genus

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG018192 (5 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_3087
Search term: hopAB2

Human Homologs

References

No references are associated with this feature.