Pseudomonas syringae pv. tomato DC3000, PSPTO_3100 (saxF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_3100
NCBI Old Locus TagPSPTO3100
Name
saxF
Synonym: PSPTO3100
Replicon chromosome
Genomic location 3484393 - 3487584 (+ strand)

Cross-References

RefSeq NP_792892.1
GI 28870273
Entrez 1184757
INSDC AAO56587.1
NCBI Locus Tag PSPTO_3100
NCBI Old Locus Tag PSPTO3100
UniParc UPI0000008E19
UniProtKB Acc Q880Q4
UniProtKB ID Q880Q4_PSESM
UniRef100 UniRef100_Q880Q4
UniRef50 UniRef50_Q880Q4
UniRef90 UniRef90_Q880Q4

Product

Feature Type CDS
Coding Frame 1
Product Name
aliphatic isothiocyanate resistance protein SaxF; AcrB/AcrD/AcrF family
Synonyms
Evidence for Translation
Charge (pH 7) -10.67
Kyte-Doolittle Hydrophobicity Value 0.319
Molecular Weight (kDa) 115.1
Isoelectric Point (pI) 5.41

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AMR gene predictions from CARD database

Identified using the Resistance Gene Identifier (RGI)

Model Name Definition Accession Model Type (?) SNP Cutoff Bit Score Percent Identity CARD Version
adeF AdeF is the membrane fusion protein of the multidrug efflux complex AdeFGH. [PMID:20696879] ARO:3000777 protein homolog model Strict 1336.2 66.1 3.2.5

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 489 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000417 (2093 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_3100
Search term: saxF

Human Homologs

References

No references are associated with this feature.