Pseudomonas syringae pv. tomato DC3000, PSPTO_3102

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_3102
NCBI Old Locus Tag	PSPTO3102
Name	Synonym: PSPTO3102
Replicon	chromosome
Genomic location	3489064 - 3490233 (+ strand)

Cross-References

RefSeq	NP_792894.1
GI	28870275
Entrez	1184759
INSDC	AAO56589.1
NCBI Locus Tag	PSPTO_3102
NCBI Old Locus Tag	PSPTO3102
UniParc	UPI0000008E1B
UniProtKB Acc	Q880Q2
UniProtKB ID	Q880Q2_PSESM
UniRef100	UniRef100_Q880Q2
UniRef50	UniRef50_Q88HD2
UniRef90	UniRef90_Q880Q2

Product

Feature Type	CDS
Coding Frame	1
Product Name	TPR domain-containing protein
Synonyms
Evidence for Translation
Charge (pH 7)	-6.13
Kyte-Doolittle Hydrophobicity Value	-0.267
Molecular Weight (kDa)	42.8
Isoelectric Point (pI)	5.64

Subcellular localization

Individual Mappings	Localization Confidence PMID Unknown Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 109 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG016294 (211 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_3102 Search term: TPR domain-containing protein

Human Homologs

References