Pseudomonas syringae pv. tomato DC3000, PSPTO_3345 (serS)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_3345
NCBI Old Locus TagPSPTO3345
Name
serS
Synonym: PSPTO3345
Replicon chromosome
Genomic location 3780801 - 3782081 (- strand)

Cross-References

RefSeq NP_793128.1
GI 28870509
Entrez 1185004
INSDC AAO56823.1
NCBI Locus Tag PSPTO_3345
NCBI Old Locus Tag PSPTO3345
UniParc UPI0000008EFA
UniProtKB Acc Q87ZS9
UniProtKB ID SYS_PSESM
UniRef100 UniRef100_Q87ZS9
UniRef50 UniRef50_Q8RH11
UniRef90 UniRef90_Q87ZS9

Product

Feature Type CDS
Coding Frame 1
Product Name
seryl-tRNA synthetase
Synonyms
Evidence for Translation
Charge (pH 7) -12.17
Kyte-Doolittle Hydrophobicity Value -0.287
Molecular Weight (kDa) 47.2
Isoelectric Point (pI) 4.98

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 652 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002939 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_3345
Search term: serS

Human Homologs

Ensembl 110, assembly GRCh38.p14
seryl-tRNA synthetase 1 [Source:HGNC Symbol;Acc:HGNC:10537]
E-value: 1.5e-52
Percent Identity: 31.9

References

No references are associated with this feature.