Pseudomonas syringae pv. tomato DC3000, PSPTO_3474

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_3474
NCBI Old Locus TagPSPTO3474
Name
Synonym: PSPTO3474
Replicon chromosome
Genomic location 3922872 - 3923360 (+ strand)

Cross-References

RefSeq NP_793254.1
GI 28870635
Entrez 1185139
INSDC AAO56949.1
NCBI Locus Tag PSPTO_3474
NCBI Old Locus Tag PSPTO3474
UniParc UPI0000008F76
UniProtKB Acc Q87ZF5
UniProtKB ID Q87ZF5_PSESM
UniRef100 UniRef100_Q87ZF5
UniRef50 UniRef50_Q4KDG8
UniRef90 UniRef90_S3MHE4

Product

Feature Type CDS
Coding Frame 1
Product Name
putative monovalent cation/H+ antiporter subunit E
Synonyms
Evidence for Translation
Charge (pH 7) 4.16
Kyte-Doolittle Hydrophobicity Value 0.620
Molecular Weight (kDa) 18.2
Isoelectric Point (pI) 10.02

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 120 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG018353 (112 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_3474

Human Homologs

References

No references are associated with this feature.