Pseudomonas syringae pv. tomato DC3000, PSPTO_3514 (topA)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_3514
NCBI Old Locus Tag	PSPTO3514
Name	topA Synonym: PSPTO3514
Replicon	chromosome
Genomic location	3963478 - 3966087 (- strand)

Cross-References

RefSeq	NP_793294.1
GI	28870675
Entrez	1185179
INSDC	AAO56989.1
NCBI Locus Tag	PSPTO_3514
NCBI Old Locus Tag	PSPTO3514
UniParc	UPI0000008F9E
UniProtKB Acc	Q87ZB5
UniProtKB ID	Q87ZB5_PSESM
UniRef100	UniRef100_Q87ZB5
UniRef50	UniRef50_Q9HZJ5
UniRef90	UniRef90_Q4KFC2

Product

Feature Type	CDS
Coding Frame	1
Product Name	DNA topoisomerase I
Synonyms
Evidence for Translation
Charge (pH 7)	11.73
Kyte-Doolittle Hydrophobicity Value	-0.591
Molecular Weight (kDa)	96.9
Isoelectric Point (pI)	8.50

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 665 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002571 (536 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_3514 Search term: topA Search term: DNA topoisomerase I

Human Homologs

References