Pseudomonas syringae pv. tomato DC3000, PSPTO_3826 (holB)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_3826
NCBI Old Locus Tag	PSPTO3826
Name	holB Synonym: PSPTO3826
Replicon	chromosome
Genomic location	4334243 - 4335229 (- strand)

Cross-References

RefSeq	NP_793599.1
GI	28870980
Entrez	1185497
INSDC	AAO57294.1
NCBI Locus Tag	PSPTO_3826
NCBI Old Locus Tag	PSPTO3826
UniParc	UPI00000090C3
UniProtKB Acc	Q87YH2
UniProtKB ID	Q87YH2_PSESM
UniRef100	UniRef100_Q87YH2
UniRef50	UniRef50_P52024
UniRef90	UniRef90_Q48L35

Product

Feature Type	CDS
Coding Frame	1
Product Name	DNA polymerase III subunit delta'
Synonyms
Evidence for Translation
Charge (pH 7)	-1.32
Kyte-Doolittle Hydrophobicity Value	-0.029
Molecular Weight (kDa)	36.2
Isoelectric Point (pI)	6.71

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 589 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002621 (534 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_3826 Search term: holB Search term: DNA polymerase III subunit delta'

Human Homologs

References