Pseudomonas syringae pv. tomato DC3000, PSPTO_4097 (fadD-1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_4097
NCBI Old Locus TagPSPTO4097
Name
fadD-1
Synonym: PSPTO4097
Replicon chromosome
Genomic location 4616449 - 4618140 (- strand)

Cross-References

RefSeq NP_793858.1
GI 28871239
Entrez 1185777
INSDC AAO57553.1
NCBI Locus Tag PSPTO_4097
NCBI Old Locus Tag PSPTO4097
UniParc UPI00000091B9
UniProtKB Acc Q87XS9
UniProtKB ID Q87XS9_PSESM
UniRef100 UniRef100_Q87XS9
UniRef50 UniRef50_P69452
UniRef90 UniRef90_Q48LN9

Product

Feature Type CDS
Coding Frame 1
Product Name
long-chain-fatty-acid--CoA ligase
Synonyms
Evidence for Translation
Charge (pH 7) 2.32
Kyte-Doolittle Hydrophobicity Value 0.019
Molecular Weight (kDa) 61.9
Isoelectric Point (pI) 7.47

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 601 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002317 (1059 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_4097
Search term: fadD-1

Human Homologs

Ensembl 110, assembly GRCh38.p14
acyl-CoA synthetase long chain family member 6 [Source:HGNC Symbol;Acc:HGNC:16496]
E-value: 3.1e-26
Percent Identity: 25.6
Ensembl 110, assembly GRCh38.p14
novel transcript
E-value: 3.1e-26
Percent Identity: 25.6
Ensembl 110, assembly GRCh38.p14
acyl-CoA synthetase long chain family member 6 [Source:HGNC Symbol;Acc:HGNC:16496]
E-value: 3.1e-26
Percent Identity: 25.6
Ensembl 110, assembly GRCh38.p14
acyl-CoA synthetase long chain family member 6 [Source:HGNC Symbol;Acc:HGNC:16496]
E-value: 3.1e-26
Percent Identity: 25.6
Ensembl 110, assembly GRCh38.p14
acyl-CoA synthetase long chain family member 5 [Source:HGNC Symbol;Acc:HGNC:16526]
E-value: 3.1e-26
Percent Identity: 27.3
Ensembl 110, assembly GRCh38.p14
acyl-CoA synthetase long chain family member 6 [Source:HGNC Symbol;Acc:HGNC:16496]
E-value: 3.1e-26
Percent Identity: 25.6
Ensembl 110, assembly GRCh38.p14
acyl-CoA synthetase long chain family member 5 [Source:HGNC Symbol;Acc:HGNC:16526]
E-value: 3.1e-26
Percent Identity: 27.3
Ensembl 110, assembly GRCh38.p14
novel transcript
E-value: 3.1e-26
Percent Identity: 25.6
Ensembl 110, assembly GRCh38.p14
acyl-CoA synthetase long chain family member 5 [Source:HGNC Symbol;Acc:HGNC:16526]
E-value: 3.1e-26
Percent Identity: 27.3
Ensembl 110, assembly GRCh38.p14
acyl-CoA synthetase long chain family member 5 [Source:HGNC Symbol;Acc:HGNC:16526]
E-value: 3.1e-26
Percent Identity: 27.3

References

No references are associated with this feature.