Pseudomonas syringae pv. tomato DC3000, PSPTO_4098 (fadD-2)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_4098
NCBI Old Locus TagPSPTO4098
Name
fadD-2
Synonym: PSPTO4098
Replicon chromosome
Genomic location 4618496 - 4620184 (- strand)

Cross-References

RefSeq NP_793859.1
GI 28871240
Entrez 1185778
INSDC AAO57554.1
NCBI Locus Tag PSPTO_4098
NCBI Old Locus Tag PSPTO4098
UniParc UPI00000091BA
UniProtKB Acc Q87XS8
UniProtKB ID Q87XS8_PSESM
UniRef100 UniRef100_Q87XS8
UniRef50 UniRef50_P69452
UniRef90 UniRef90_Q87XS8

Product

Feature Type CDS
Coding Frame 1
Product Name
long-chain-fatty-acid--CoA ligase
Synonyms
Evidence for Translation
Charge (pH 7) -0.12
Kyte-Doolittle Hydrophobicity Value -0.004
Molecular Weight (kDa) 61.6
Isoelectric Point (pI) 6.97

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 601 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002317 (1059 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_4098
Search term: fadD-2

Human Homologs

Ensembl 110, assembly GRCh38.p14
acyl-CoA synthetase long chain family member 6 [Source:HGNC Symbol;Acc:HGNC:16496]
E-value: 1.4e-26
Percent Identity: 28.1
Ensembl 110, assembly GRCh38.p14
acyl-CoA synthetase long chain family member 6 [Source:HGNC Symbol;Acc:HGNC:16496]
E-value: 1.4e-26
Percent Identity: 28.1
Ensembl 110, assembly GRCh38.p14
acyl-CoA synthetase long chain family member 6 [Source:HGNC Symbol;Acc:HGNC:16496]
E-value: 1.4e-26
Percent Identity: 28.1
Ensembl 110, assembly GRCh38.p14
acyl-CoA synthetase long chain family member 6 [Source:HGNC Symbol;Acc:HGNC:16496]
E-value: 1.4e-26
Percent Identity: 28.1
Ensembl 110, assembly GRCh38.p14
acyl-CoA synthetase long chain family member 6 [Source:HGNC Symbol;Acc:HGNC:16496]
E-value: 1.4e-26
Percent Identity: 28.1
Ensembl 110, assembly GRCh38.p14
acyl-CoA synthetase long chain family member 6 [Source:HGNC Symbol;Acc:HGNC:16496]
E-value: 1.4e-26
Percent Identity: 28.1

References

No references are associated with this feature.