Pseudomonas syringae pv. tomato DC3000, PSPTO_4100

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_4100
NCBI Old Locus TagPSPTO4100
Name
Synonym: PSPTO4100
Replicon chromosome
Genomic location 4620529 - 4621050 (+ strand)

Cross-References

RefSeq NP_793861.1
GI 28871242
Entrez 1185780
INSDC AAO57556.1
NCBI Locus Tag PSPTO_4100
NCBI Old Locus Tag PSPTO4100
UniParc UPI00000091BC
UniProtKB Acc Q87XS6
UniProtKB ID Q87XS6_PSESM
UniRef100 UniRef100_Q87XS6
UniRef50 UniRef50_D7I4X1
UniRef90 UniRef90_D7I4X1

Product

Feature Type CDS
Coding Frame 1
Product Name
MaoC-like domain protein
Synonyms
Evidence for Translation
Charge (pH 7) -3.63
Kyte-Doolittle Hydrophobicity Value -0.186
Molecular Weight (kDa) 19.3
Isoelectric Point (pI) 5.93

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 275 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002315 (537 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_4100

Human Homologs

Ensembl 110, assembly GRCh38.p14
hydroxyacyl-thioester dehydratase type 2 [Source:HGNC Symbol;Acc:HGNC:53111]
E-value: 3.8e-15
Percent Identity: 28.4
Ensembl 110, assembly GRCh38.p14
hydroxyacyl-thioester dehydratase type 2 [Source:HGNC Symbol;Acc:HGNC:53111]
E-value: 3.8e-15
Percent Identity: 28.4
Ensembl 110, assembly GRCh38.p14
hydroxyacyl-thioester dehydratase type 2 [Source:HGNC Symbol;Acc:HGNC:53111]
E-value: 3.8e-15
Percent Identity: 28.4

References

No references are associated with this feature.