Pseudomonas syringae pv. tomato DC3000, PSPTO_4104

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_4104
NCBI Old Locus TagPSPTO4104
Name
Synonym: PSPTO4104
Replicon chromosome
Genomic location 4623994 - 4626840 (+ strand)

Cross-References

RefSeq NP_793865.1
GI 28871246
Entrez 1185784
INSDC AAO57560.1
NCBI Locus Tag PSPTO_4104
NCBI Old Locus Tag PSPTO4104
UniParc UPI00000091C0
UniProtKB Acc Q87XS2
UniProtKB ID RAPA_PSESM
UniRef100 UniRef100_Q87XS2
UniRef50 UniRef50_Q8ZRV8
UniRef90 UniRef90_Q87XS2

Product

Feature Type CDS
Coding Frame 1
Product Name
ATP-dependent helicase HepA
Synonyms
Evidence for Translation
Charge (pH 7) -43.07
Kyte-Doolittle Hydrophobicity Value -0.274
Molecular Weight (kDa) 106.6
Isoelectric Point (pI) 4.79

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 314 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002310 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_4104

Human Homologs

Ensembl 110, assembly GRCh38.p14
chromodomain helicase DNA binding protein 9 [Source:HGNC Symbol;Acc:HGNC:25701]
E-value: 1.1e-07
Percent Identity: 22.3
Ensembl 110, assembly GRCh38.p14
chromodomain helicase DNA binding protein 9 [Source:HGNC Symbol;Acc:HGNC:25701]
E-value: 1.1e-07
Percent Identity: 22.3
Ensembl 110, assembly GRCh38.p14
chromodomain helicase DNA binding protein 9 [Source:HGNC Symbol;Acc:HGNC:25701]
E-value: 1.1e-07
Percent Identity: 22.3
Ensembl 110, assembly GRCh38.p14
chromodomain helicase DNA binding protein 9 [Source:HGNC Symbol;Acc:HGNC:25701]
E-value: 1.1e-07
Percent Identity: 22.3
Ensembl 110, assembly GRCh38.p14
chromodomain helicase DNA binding protein 9 [Source:HGNC Symbol;Acc:HGNC:25701]
E-value: 1.1e-07
Percent Identity: 22.3

References

No references are associated with this feature.