Pseudomonas syringae pv. tomato DC3000, PSPTO_4106

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4106
NCBI Old Locus Tag	PSPTO4106
Name	Synonym: PSPTO4106
Replicon	chromosome
Genomic location	4628608 - 4630878 (+ strand)

Cross-References

RefSeq	NP_793867.1
GI	28871248
Entrez	1185786
INSDC	AAO57562.1
NCBI Locus Tag	PSPTO_4106
NCBI Old Locus Tag	PSPTO4106
UniParc	UPI00000091C2
UniProtKB Acc	Q87XS0
UniProtKB ID	Q87XS0_PSESM
UniRef100	UniRef100_Q87XS0
UniRef50	UniRef50_Q87XS0
UniRef90	UniRef90_Q87XS0

Product

Feature Type	CDS
Coding Frame	1
Product Name	GGDEF domain/EAL domain protein
Synonyms
Evidence for Translation
Charge (pH 7)	-4.99
Kyte-Doolittle Hydrophobicity Value	0.164
Molecular Weight (kDa)	83.7
Isoelectric Point (pI)	6.64

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 455 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002307 (481 members)
Putative Inparalogs	1 predicted inparalogs hypothetical protein (PSPTO_B0009) 96.4% identity

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4106 Search term: GGDEF domain/EAL domain protein

Human Homologs

References