Pseudomonas syringae pv. tomato DC3000, PSPTO_4108

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4108
NCBI Old Locus Tag	PSPTO4108
Name	Synonym: PSPTO4108
Replicon	chromosome
Genomic location	4631636 - 4632760 (+ strand)

Cross-References

RefSeq	NP_793869.1
GI	28871250
Entrez	1185788
INSDC	AAO57564.1
NCBI Locus Tag	PSPTO_4108
NCBI Old Locus Tag	PSPTO4108
UniParc	UPI00000091C4
UniProtKB Acc	Q87XR8
UniProtKB ID	Q87XR8_PSESM
UniRef100	UniRef100_Q87XR8
UniRef50	UniRef50_P21175
UniRef90	UniRef90_S3N136

Product

Feature Type	CDS
Coding Frame	1
Product Name	leucine ABC transporter subunit substrate-binding protein LivK
Synonyms
Evidence for Translation
Charge (pH 7)	-0.62
Kyte-Doolittle Hydrophobicity Value	-0.182
Molecular Weight (kDa)	39.5
Isoelectric Point (pI)	6.80

Subcellular localization

Individual Mappings	Localization Confidence PMID Periplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 419 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001036 (536 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4108 Search term: leucine ABC transporter subunit substrate-binding protein LivK

Human Homologs

References