Pseudomonas syringae pv. tomato DC3000, PSPTO_4109

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_4109
NCBI Old Locus TagPSPTO4109
Name
Synonym: PSPTO4109
Replicon chromosome
Genomic location 4632986 - 4633909 (+ strand)

Cross-References

RefSeq NP_793870.1
GI 28871251
Entrez 1185789
INSDC AAO57565.1
NCBI Locus Tag PSPTO_4109
NCBI Old Locus Tag PSPTO4109
UniParc UPI00000091C5
UniProtKB Acc Q87XR7
UniProtKB ID Q87XR7_PSESM
UniRef100 UniRef100_A0A038GD76
UniRef50 UniRef50_C0QFK4
UniRef90 UniRef90_Q4ZPP6

Product

Feature Type CDS
Coding Frame 1
Product Name
high-affinity branched-chain amino acid ABC transporter permease
Synonyms
Evidence for Translation
Charge (pH 7) 2.64
Kyte-Doolittle Hydrophobicity Value 0.917
Molecular Weight (kDa) 32.2
Isoelectric Point (pI) 8.61

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 432 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001035 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_4109

Human Homologs

References

No references are associated with this feature.