Pseudomonas syringae pv. tomato DC3000, PSPTO_4112

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse

Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000
GCF_000007805.1|latest
Locus Tag
PSPTO_4112
NCBI Old Locus TagPSPTO4112
Name
Synonym: PSPTO4112
Replicon chromosome
Genomic location 4635936 - 4636637 (+ strand)

Cross-References

RefSeq NP_793873.1
GI 28871254
Entrez 1185792
INSDC AAO57568.1
NCBI Locus Tag PSPTO_4112
NCBI Old Locus Tag PSPTO4112
UniParc UPI00000091C8
UniProtKB Acc Q87XR4
UniProtKB ID Q87XR4_PSESM
UniRef100 UniRef100_Q87XR4
UniRef50 UniRef50_Q0K8G7
UniRef90 UniRef90_S3MMZ8

Product

Feature Type CDS
Coding Frame 1
Product Name
high-affinity amino acid ABC transporter, ATP-binding protein
Synonyms
Evidence for Translation
Charge (pH 7) -1.31
Kyte-Doolittle Hydrophobicity Value -0.027
Molecular Weight (kDa) 25.7
Isoelectric Point (pI) 6.29

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001032 (553 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_4112

Human Homologs

Ensembl 97, assembly GRCh38.p12
ATP binding cassette subfamily B member 5 [Source:HGNC Symbol;Acc:HGNC:46]
E-value: 1.4e-16
Percent Identity: 31.2
Ensembl 97, assembly GRCh38.p12
ATP binding cassette subfamily B member 5 [Source:HGNC Symbol;Acc:HGNC:46]
E-value: 1.4e-16
Percent Identity: 31.2

References

No references are associated with this feature.