Pseudomonas syringae pv. tomato DC3000, PSPTO_4112

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4112
NCBI Old Locus Tag	PSPTO4112
Name	Synonym: PSPTO4112
Replicon	chromosome
Genomic location	4635936 - 4636637 (+ strand)

Cross-References

RefSeq	NP_793873.1
GI	28871254
Entrez	1185792
INSDC	AAO57568.1
NCBI Locus Tag	PSPTO_4112
NCBI Old Locus Tag	PSPTO4112
UniParc	UPI00000091C8
UniProtKB Acc	Q87XR4
UniProtKB ID	Q87XR4_PSESM
UniRef100	UniRef100_Q87XR4
UniRef50	UniRef50_Q0K8G7
UniRef90	UniRef90_S3MMZ8

Product

Feature Type	CDS
Coding Frame	1
Product Name	high-affinity amino acid ABC transporter, ATP-binding protein
Synonyms
Evidence for Translation
Charge (pH 7)	-1.31
Kyte-Doolittle Hydrophobicity Value	-0.027
Molecular Weight (kDa)	25.7
Isoelectric Point (pI)	6.29

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001032 (536 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4112 Search term: high-affinity amino acid ABC transporter, ATP-binding protein

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000384881 ATP binding cassette subfamily B member 5 [Source:HGNC Symbol;Acc:HGNC:46] E-value: 1.6e-16 Percent Identity: 31.2
Ensembl 110, assembly GRCh38.p14	ENSP00000258738 ATP binding cassette subfamily B member 5 [Source:HGNC Symbol;Acc:HGNC:46] E-value: 1.6e-16 Percent Identity: 31.2

References